Scaffold BISONR_C7390

Overview

Basic Information

• Taxon OID: 2010170001
• Scaffold ID: BISONR_C7390
• Source Dataset Name: 3_050719R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1714
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Source Dataset Sampling Location

• Location Name: Bison Pool / Rosette Geyser, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.6
  • Long. (^o): -110.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039409	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
BISONR_210240	F039409	GGGGG	MQPKVCLVLNNFGTFNRAWTQILRNLGIDYTLCIATSGGTGANIQTPQGVFSPSSPDLRGYFRQFDAVILCDSVNNLAATSLINYSVFWMSWNAPEDPAFLFFNPHFSAAITESAYNSNFPSDFPIVRPSPSDIAGTLYAADGGSASSISPLGVGAVSGRGACVLFPAENIRAHVMTICNTHTN